PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g27920
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ARF
Protein Properties Length: 671aa    MW: 74056.8 Da    PI: 6.9325
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g27920genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.51.5e-24120221199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g +W++++iyr++++r++lt+GW++Fv++++L +gD++vF+  + +++ l+
  Tp7g27920 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldynAEPPVQ--TILAKDVHGDVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFM--RAESGDLC 215
                89****************************985444444..8999*********************************************..4489999* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                v+++r+
  Tp7g27920 216 VGIRRA 221
                ****97 PP

2Auxin_resp113.61.8e-37279362183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a ++ +FevvY+PrastseF+vk+ + ++a++++++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
   Tp7g27920 279 AATLAISGRPFEVVYYPRASTSEFCVKALDARTAMRIPWCSGMRFKMAFETEDSSRISWfMGTVSAVNVSDPIRWPNSPWRLLQ 362
                 67788899**************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-29111221IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-38112227IPR015300DNA-binding pseudobarrel domain
CDDcd100175.22E-22118220No hitNo description
SMARTSM010191.7E-22120222IPR003340B3 DNA binding domain
PfamPF023621.6E-22120221IPR003340B3 DNA binding domain
PROSITE profilePS5086313.267120222IPR003340B3 DNA binding domain
PfamPF065073.2E-31279362IPR010525Auxin response factor
PROSITE profilePS5174518.27585665IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MINVMNPMKS GSEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNMPI  60
PPMVLCRVLG IKYMADAESD EVFAKLRLIP LKDDHFVDHE YGDGEDGNGF ESNSEKTPSF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP  180
RRHLLTTGWS NFVNQKKLVA GDSIVFMRAE SGDLCVGIRR AKRGGIGNGP EYSAGWNPIG  240
GSCGYSSLLR EEESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS  300
EFCVKALDAR TAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL  360
LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR KKMRLPQHPD YNNLINSIPV  420
PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSST  480
LPLSPPLGLR NIDSRNEKGF CFLTMGTAPC NDTESKKSHI VLFGKLILPE EQTSEKGSTD  540
TANIEKTQIS SGGSNQNCVA GRELSSSDEG SPCSNKIHDA SGLETGHCKV FMESDDVGRT  600
LDLSVLGSYE ELSRKLSDMF GIQKSEMLSS VLYRDASGAI KYAGNEPFSE FLKTARRLTI  660
LTEQGSESVV I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-76938343388Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0597920.0AY059792.1 Arabidopsis thaliana putative transcription factor (At4g30080) mRNA, complete cds.
GenBankAY0911980.0AY091198.1 Arabidopsis thaliana putative transcription factor (At4g30080) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412761.10.0hypothetical protein EUTSA_v10024601mg
SwissprotQ93YR90.0ARFP_ARATH; Auxin response factor 16
TrEMBLV4MCQ20.0V4MCQ2_EUTSA; Auxin response factor
STRINGscaffold_701217.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16